Well, you would have to hook into the filter like this;
add_filter('autoptimize_js_after_minify','kokomoweb_js_after_minfy',10,1);
function kokomoweb_js_after_minify($jsIn) {
$jsOut=fancy_code_to_remove_important_comments($jsIn);
return $jsOut;
}
where fancy_code_to_remove_important_comments would probably be some smart regular-expression to remove everything between (and including) /*!
and */
.
Feel free to share your result here for others to enjoy! :-)
Have fun,
frank