OK, some findings;
1. installed cookie-notice on my test-blog, gets autoptimized just fine, so this is not a compatibility-problem as such, but a specific problem in your context. this'll probably require some debugging-code to be added, I'll come back to that.
2. on the other blogpost pull-quotes.js is not missing in action, it's just not aggregated. did you add anything to the js-exclude list in the AO-settings that might make AO exclude that file?
frank